PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01815.10
Common NameJCGZ_12349, LOC105639667
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 294aa    MW: 32727.7 Da    PI: 6.3005
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01815.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601383.4e-4371061100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh++FGasnv kll++l +++reda++sl+yeAear+rdPvyG+vg+i+ lq++l++l+ +l  
  Jcr4S01815.10   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVFGASNVAKLLNELTPTQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKELQGDLYN 102
                    7******************************************************************************************99998 PP

         DUF260  97 lkee 100
                    +k+e
  Jcr4S01815.10 103 AKKE 106
                    8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.1726107IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-437103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSTPNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH RVFGASNVAK LLNELTPTQR  60
EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKELQGDL YNAKKELAQY IGPQAMLPTL  120
QSPPYMAAQP ANLGNPSPSL IQHGGLPIMG IPTGQLSVRE QQQQQRVYDA QQLAAALAAR  180
EQQEMFRVYE HQQQQQEIVR FNRGFDSSDS VNNNNNNTTG FNQIAVAAMS PSLALGSFDI  240
TPYQIQPEQI DQHHHLQAQL FLQSEQEEQQ SQPTQQPKHQ RSGSDEGGCV VPSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079180.10.0PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ37e-88LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A067KA720.0A0A067KA72_JATCU; Uncharacterized protein
STRINGPOPTR_0007s11460.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-85ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]